| 1. Round | 13/08/1988 | BFC Dynamo | - | HFC Chemie | 2:2 | ||||
| 2. Round | 20/08/1988 | BSG Wismut Aue | - | BFC Dynamo | 2:2 | ||||
| 3. Round | 24/08/1988 | BFC Dynamo | - | 1. FC Union Berlin | 1:1 | ||||
| 4. Round | 02/09/1988 | Rot-Weiß Erfurt | - | BFC Dynamo | 2:6 | ||||
| 6. Round | 24/09/1988 | Dynamo Dresden | - | BFC Dynamo | 2:1 | ||||
| 7. Round | 30/09/1988 | BFC Dynamo | - | BSG Stahl Brandenburg | 2:0 | ||||
| 8. Round | 05/10/1988 | BSG Sachsenring Zwickau | - | BFC Dynamo | 0:3 | ||||
| 9. Round | 22/10/1988 | BFC Dynamo | - | FC Karl-Marx-Stadt | 5:1 | ||||
| 10. Round | 04/11/1988 | BFC Dynamo | - | 1. FC Lokomotive Leipzig | 0:2 | ||||
| 11. Round | 12/11/1988 | BSG Energie Cottbus | - | BFC Dynamo | 0:2 | ||||
| 12. Round | 19/11/1988 | BFC Dynamo | - | FC Carl Zeiss Jena | 1:1 | ||||
| 13. Round | 03/12/1988 | Hansa Rostock | - | BFC Dynamo | 1:0 | ||||
| 16. Round | 18/03/1989 | 1. FC Union Berlin | - | BFC Dynamo | 2:3 | ||||
| 17. Round | 25/03/1989 | BFC Dynamo | - | Rot-Weiß Erfurt | 1:2 |
Germany