| 7. Round | 26/10/2008 | FC 08 Villingen [Youth] | - | 1. FSV Mainz 05 [Youth] | 0:5 | ||||
| 8. Round | 01/11/2008 | 1. FSV Mainz 05 [Youth] | - | 1. FC Kaiserslautern [Youth] | 1:2 | ||||
| 9. Round | 09/11/2008 | SpVgg Unterhaching [Youth] | - | 1. FSV Mainz 05 [Youth] | 1:2 | ||||
| 10. Round | 15/11/2008 | 1. FSV Mainz 05 [Youth] | - | Bayern München [Youth] | 0:2 | ||||
| 11. Round | 29/11/2008 | VfB Stuttgart [Youth] | - | 1. FSV Mainz 05 [Youth] | 3:2 | ||||
| 12. Round | 06/12/2008 | 1. FSV Mainz 05 [Youth] | - | SC Freiburg [Youth] | 3:1 | ||||
| 18. Round | 15/03/2009 | 1. FSV Mainz 05 [Youth] | - | Eintracht Frankfurt [Youth] | 1:0 | ||||
| 19. Round | 22/03/2009 | Kickers Offenbach [Youth] | - | 1. FSV Mainz 05 [Youth] | 1:1 | ||||
| 22. Round | 26/04/2009 | 1. FSV Mainz 05 [Youth] | - | SpVgg Unterhaching [Youth] | 4:3 | ||||
| 23. Round | 16/05/2009 | Bayern München [Youth] | - | 1. FSV Mainz 05 [Youth] | 1:1 |
Germany