| 2. Round | 22/07/2016 | SpVgg Bayreuth | - | TSV 1860 München II | 4:2 | ||||
| 3. Round | 29/07/2016 | TSV 1860 Rosenheim | - | SpVgg Bayreuth | 1:1 | ||||
| 4. Round | 02/08/2016 | SpVgg Bayreuth | - | VfR Garching | 2:1 |  |
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| 7. Round | 20/08/2016 | SpVgg Bayreuth | - | Bayern München II | 1:3 | ||||
| 8. Round | 26/08/2016 | SpVgg Bayreuth | - | FC Augsburg II | 0:0 | ||||
| 10. Round | 10/09/2016 | SpVgg Bayreuth | - | 1. FC Schweinfurt 05 | 0:2 | ||||
| 11. Round | 16/09/2016 | 1. FC Nürnberg II | - | SpVgg Bayreuth | 0:5 | ||||
| 13. Round | 01/10/2016 | SV Seligenporten | - | SpVgg Bayreuth | 4:1 | ||||
| 19. Round | 12/11/2016 | TSV 1860 München II | - | SpVgg Bayreuth | 1:1 | |
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| 22. Round | 06/03/2017 | SpVgg Greuther Fürth II | - | SpVgg Bayreuth | 1:1 | ||||
| 29. Round | 17/04/2017 | SpVgg Bayreuth | - | SV Seligenporten | 3:1 | ||||
| 30. Round | 22/04/2017 | SpVgg Bayreuth | - | TSV 1860 Rosenheim | 3:1 | ||||
| 27. Round | 25/04/2017 | SpVgg Bayreuth | - | 1. FC Nürnberg II | 1:4 | ||||
| 32. Round | 06/05/2017 | SpVgg Bayreuth | - | TSV Buchbach | 0:3 | ||||
| 34. Round | 19/05/2017 | SpVgg Bayreuth | - | FC Ingolstadt 04 II | 0:1 |
Germany