| 2. Round | 20/07/2016 | Jahn Regensburg II | - | TSV 1896 Rain | 0:3 | ||||
| 4. Round | 31/07/2016 | Jahn Regensburg II | - | TSV Kottern-St. Mang | 2:1 | ||||
| 9. Round | 28/08/2016 | Jahn Regensburg II | - | DJK Vilzing | 4:0 | ||||
| 10. Round | 03/09/2016 | 1. FC Sonthofen | - | Jahn Regensburg II | 3:0 | ||||
| 11. Round | 11/09/2016 | Jahn Regensburg II | - | SV Heimstetten | 1:2 |  |
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| 12. Round | 18/09/2016 | FC Pipinsried | - | Jahn Regensburg II | 3:2 |  |
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| 13. Round | 25/09/2016 | Jahn Regensburg II | - | TSV Landsberg | 4:1 | |
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| 27. Round | 02/04/2017 | Jahn Regensburg II | - | 1. FC Sonthofen | 0:2 | ||||
| 31. Round | 30/04/2017 | Jahn Regensburg II | - | TSV 1883 Bogen | 3:1 | ||||
| 32. Round | 06/05/2017 | FC Unterföhring | - | Jahn Regensburg II | 2:0 |
Germany