| 3. Round | 20/07/2013 | TSV 1896 Rain | - | Würzburger Kickers | 0:2 | ||||
| 4. Round | 26/07/2013 | Würzburger Kickers | - | SV Seligenporten | 5:1 | ||||
| 6. Round | 03/08/2013 | Würzburger Kickers | - | FC Memmingen | 0:1 | ||||
| 5. Round | 07/08/2013 | FV Illertissen | - | Würzburger Kickers | 0:3 | ||||
| 9. Round | 18/08/2013 | SV Heimstetten | - | Würzburger Kickers | 0:2 | ||||
| 12. Round | 04/09/2013 | SV Schalding-Heining | - | Würzburger Kickers | 3:1 | ||||
| 13. Round | 07/09/2013 | Würzburger Kickers | - | 1. FC Nürnberg II | 4:2 | ||||
| 14. Round | 16/09/2013 | SpVgg Greuther Fürth II | - | Würzburger Kickers | 2:2 | ||||
| 21. Round | 02/11/2013 | Bayern München II | - | Würzburger Kickers | 4:3 | ||||
| 22. Round | 09/11/2013 | Würzburger Kickers | - | TSV 1896 Rain | 5:2 | ||||
| 23. Round | 16/11/2013 | SV Seligenporten | - | Würzburger Kickers | 0:0 |  |
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| 24. Round | 23/11/2013 | Würzburger Kickers | - | FV Illertissen | 1:1 | |
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| 27. Round | 15/03/2014 | TSV 1860 Rosenheim | - | Würzburger Kickers | 5:1 |
Germany