| 1. Round | 13/08/2006 | SC Freiburg | - | Hansa Rostock | 0:0 | ||||
| 2. Round | 20/08/2006 | Rot-Weiss Essen | - | SC Freiburg | 2:0 |  |
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| 3. Round | 25/08/2006 | SC Freiburg | - | SpVgg Unterhaching | 1:1 | ||||
| 10. Round | 03/11/2006 | SC Freiburg | - | Eintracht Braunschweig | 1:0 | ||||
| 11. Round | 08/11/2006 | FC Augsburg | - | SC Freiburg | 2:0 | ||||
| 12. Round | 12/11/2006 | SC Freiburg | - | 1. FC Köln | 0:0 | ||||
| 13. Round | 17/11/2006 | FC Carl Zeiss Jena | - | SC Freiburg | 2:1 |  |
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| 14. Round | 26/11/2006 | SC Freiburg | - | Kickers Offenbach | 1:3 | ||||
| 17. Round | 17/12/2006 | TuS Koblenz | - | SC Freiburg | 0:1 | ||||
| 18. Round | 22/01/2007 | Hansa Rostock | - | SC Freiburg | 0:1 | ||||
| 22. Round | 19/02/2007 | SpVgg Greuther Fürth | - | SC Freiburg | 0:0 | ||||
| 24. Round | 04/03/2007 | SC Freiburg | - | MSV Duisburg | 2:1 | |
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| 27. Round | 01/04/2007 | Eintracht Braunschweig | - | SC Freiburg | 0:2 | ||||
| 28. Round | 08/04/2007 | SC Freiburg | - | FC Augsburg | 2:0 | ||||
| 31. Round | 29/04/2007 | Kickers Offenbach | - | SC Freiburg | 2:3 | ||||
| 33. Round | 13/05/2007 | Karlsruher SC | - | SC Freiburg | 0:3 | |
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| 34. Round | 20/05/2007 | SC Freiburg | - | TuS Koblenz | 2:0 |
Germany