| 2. Round | 17/08/2013 | SpVgg Greuther Fürth [Youth] | - | Wacker Burghausen [Youth] | 3:0 | ||||
| 3. Round | 25/08/2013 | Wacker Burghausen [Youth] | - | Bayern München [Youth] | 1:2 | ||||
| 4. Round | 01/09/2013 | FC-Astoria Walldorf [Youth] | - | Wacker Burghausen [Youth] | 3:0 |  |
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| 13. Round | 01/12/2013 | FC Augsburg [Youth] | - | Wacker Burghausen [Youth] | 3:0 | ||||
| 14. Round | 08/12/2013 | Karlsruher SC [Youth] | - | Wacker Burghausen [Youth] | 4:2 |
Austria