| 3. Round | 13/08/2006 | SSG 09 Bergisch Gladbach | - | MSV Duisburg II | 2:2 | ||||
| 4. Round | 20/08/2006 | MSV Duisburg II | - | Alemannia Aachen II | 3:5 | ||||
| 5. Round | 27/08/2006 | VfB Homberg | - | MSV Duisburg II | 5:2 | ||||
| 6. Round | 03/09/2006 | MSV Duisburg II | - | SSVg Velbert | 0:3 | ||||
| 7. Round | 10/09/2006 | Rot-Weiß Oberhausen | - | MSV Duisburg II | 1:0 |  |
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| 8. Round | 17/09/2006 | MSV Duisburg II | - | 1. FC Kleve | 2:1 | ||||
| 9. Round | 24/09/2006 | Wuppertaler SV II | - | MSV Duisburg II | 1:1 | ||||
| 18. Round | 09/12/2006 | MSV Duisburg II | - | Schwarz-Weiß Essen | 1:5 | ||||
| 16. Round | 12/12/2006 | GFC Düren | - | MSV Duisburg II | 2:2 | ||||
| 19. Round | 16/12/2006 | Union Solingen | - | MSV Duisburg II | 2:1 | ||||
| 22. Round | 04/03/2007 | MSV Duisburg II | - | VfB Homberg | 4:1 | ||||
| 28. Round | 22/04/2007 | VFB Speldorf | - | MSV Duisburg II | 1:1 | ||||
| 30. Round | 06/05/2007 | 1. FC Bocholt | - | MSV Duisburg II | 2:1 |
Austria