| 15. Round | 31/01/2016 | VfL Wolfsburg [Youth B] | - | FC Carl Zeiss Jena [Youth B] | 5:1 | ||||
| 17. Round | 20/02/2016 | Hertha BSC [Youth B] | - | FC Carl Zeiss Jena [Youth B] | 3:0 | ||||
| 18. Round | 28/02/2016 | FC Carl Zeiss Jena [Youth B] | - | 1. FC Union Berlin [Youth B] | 0:1 | ||||
| 19. Round | 06/03/2016 | Hamburger SV [Youth B] | - | FC Carl Zeiss Jena [Youth B] | 0:1 | ||||
| 20. Round | 13/03/2016 | FC Carl Zeiss Jena [Youth B] | - | VfL Osnabrück [Youth B] | 2:1 | ||||
| 16. Round | 24/03/2016 | FC Carl Zeiss Jena [Youth B] | - | Dynamo Dresden [Youth B] | 3:0 |  |
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| 21. Round | 02/04/2016 | Eintracht Braunschweig [Youth B] | - | FC Carl Zeiss Jena [Youth B] | 3:1 | ||||
| 22. Round | 09/04/2016 | FC Carl Zeiss Jena [Youth B] | - | TeBe Berlin [Youth B] | 1:0 | ||||
| 23. Round | 16/04/2016 | FC St. Pauli [Youth B] | - | FC Carl Zeiss Jena [Youth B] | 0:0 | ||||
| 24. Round | 23/04/2016 | FC Carl Zeiss Jena [Youth B] | - | 1. FC Magdeburg [Youth B] | 0:2 | ||||
| 25. Round | 28/05/2016 | Werder Bremen [Youth B] | - | FC Carl Zeiss Jena [Youth B] | 4:2 | ||||
| 26. Round | 05/06/2016 | FC Carl Zeiss Jena [Youth B] | - | RB Leipzig [Youth B] | 0:2 |
Germany