| 5. Round | 11/09/2016 | FCE Rheine | - | Westfalia Rhynern | 2:0 | ||||
| 7. Round | 25/09/2016 | FCE Rheine | - | TuS Ennepetal | 2:0 dec. | ||||
| 8. Round | 02/10/2016 | FCE Rheine | - | FC Brünninghausen | 3:1 | ||||
| 10. Round | 16/10/2016 | SC Paderborn 07 II | - | FCE Rheine | 0:0 | ||||
| 13. Round | 06/11/2016 | FCE Rheine | - | Roland Beckum | 3:0 | ||||
| 14. Round | 13/11/2016 | Hammer SpVg | - | FCE Rheine | 3:2 | ||||
| 15. Round | 27/11/2016 | ASC 09 Dortmund | - | FCE Rheine | 7:1 | ||||
| 16. Round | 04/12/2016 | FCE Rheine | - | TSV Marl-Hüls | 0:3 | ||||
| 17. Round | 11/12/2016 | SC Hassel | - | FCE Rheine | 0:1 | ||||
| 18. Round | 18/12/2016 | SpVgg Erkenschwick | - | FCE Rheine | 3:1 | ||||
| 22. Round | 12/03/2017 | Westfalia Rhynern | - | FCE Rheine | 2:1 | ||||
| 26. Round | 09/04/2017 | 1. FC Kaan-Marienborn | - | FCE Rheine | 0:0 | ||||
| 27. Round | 13/04/2017 | FCE Rheine | - | SC Paderborn 07 II | 2:1 | ||||
| 29. Round | 23/04/2017 | FCE Rheine | - | TuS Erndtebrück | 1:1 | ||||
| 30. Round | 30/04/2017 | Roland Beckum | - | FCE Rheine | 0:1 | ||||
| 31. Round | 07/05/2017 | FCE Rheine | - | Hammer SpVg | 3:1 | ||||
| 33. Round | 21/05/2017 | TSV Marl-Hüls | - | FCE Rheine | 3:1 | ||||
| 34. Round | 26/05/2017 | FCE Rheine | - | SC Hassel | 3:0 |
Germany