| 1. Round | 07/08/2016 | SV Merseburg 99 | - | SV SCHOTT Jena | 1:1 | ||||
| 3. Round | 28/08/2016 | Germania Halberstadt | - | SV SCHOTT Jena | 3:1 |  |
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| 4. Round | 10/09/2016 | SV SCHOTT Jena | - | Brandenburger SC Süd | 0:0 | ||||
| 12. Round | 19/11/2016 | FC Carl Zeiss Jena II | - | SV SCHOTT Jena | 3:0 | ||||
| 13. Round | 26/11/2016 | SV SCHOTT Jena | - | FC Einheit Rudolstadt | 1:2 | ||||
| 14. Round | 03/12/2016 | Askania Bernburg | - | SV SCHOTT Jena | 1:1 |
Germany