| 1. Round | 21/07/2012 | 1. FC Heidenheim 1846 | - | Karlsruher SC | 2:2 | ||||
| 5. Round | 11/08/2012 | 1. FC Heidenheim 1846 | - | SV Babelsberg 03 | 2:1 |  |
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| 19. Round | 24/11/2012 | Kickers Offenbach | - | 1. FC Heidenheim 1846 | 0:1 | ||||
| 20. Round | 01/12/2012 | Karlsruher SC | - | 1. FC Heidenheim 1846 | 5:2 | ||||
| 22. Round | 15/12/2012 | Stuttgarter Kickers | - | 1. FC Heidenheim 1846 | 0:2 | |
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| 23. Round | 26/01/2013 | 1. FC Heidenheim 1846 | - | SpVgg Unterhaching | 2:1 | ||||
| 21. Round | 30/01/2013 | 1. FC Heidenheim 1846 | - | Rot-Weiß Erfurt | 2:1 | ||||
| 25. Round | 09/02/2013 | 1. FC Heidenheim 1846 | - | Preußen Münster | 3:1 | ||||
| 26. Round | 16/02/2013 | Chemnitzer FC | - | 1. FC Heidenheim 1846 | 2:1 |
Germany