| 1. Round | 13/08/2006 | Erzgebirge Aue | - | SpVgg Unterhaching | 1:0 | ||||
| 4. Round | 15/09/2006 | SpVgg Unterhaching | - | FC Augsburg | 0:1 | ||||
| 7. Round | 15/10/2006 | FC Carl Zeiss Jena | - | SpVgg Unterhaching | 0:2 | ||||
| 8. Round | 20/10/2006 | SpVgg Unterhaching | - | 1. FC Köln | 0:0 | ||||
| 9. Round | 29/10/2006 | SC Paderborn 07 | - | SpVgg Unterhaching | 2:0 | ||||
| 10. Round | 03/11/2006 | SpVgg Unterhaching | - | Wacker Burghausen | 0:2 | ||||
| 11. Round | 07/11/2006 | Eintracht Braunschweig | - | SpVgg Unterhaching | 2:3 |  |
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| 12. Round | 12/11/2006 | SpVgg Unterhaching | - | Rot-Weiss Essen | 2:1 | ||||
| 13. Round | 19/11/2006 | TuS Koblenz | - | SpVgg Unterhaching | 0:0 | ||||
| 14. Round | 26/11/2006 | SpVgg Unterhaching | - | Karlsruher SC | 0:1 | ||||
| 15. Round | 03/12/2006 | SpVgg Unterhaching | - | TSV 1860 München | 5:1 | ||||
| 16. Round | 10/12/2006 | SpVgg Greuther Fürth | - | SpVgg Unterhaching | 1:0 | ||||
| 17. Round | 15/12/2006 | SpVgg Unterhaching | - | Hansa Rostock | 0:0 |
Poland