| 24. Round | 24/02/2007 | 1. FC Bad Kötzting | - | SpVgg Bayreuth | 2:1 | ||||
| 25. Round | 03/03/2007 | VfL Frohnlach | - | 1. FC Bad Kötzting | 3:2 | ||||
| 26. Round | 10/03/2007 | 1. FC Bad Kötzting | - | SC Fürstenfeldbruck | 6:1 | ||||
| 27. Round | 17/03/2007 | Jahn Regensburg | - | 1. FC Bad Kötzting | 4:1 | ||||
| 28. Round | 24/03/2007 | 1. FC Bad Kötzting | - | Wacker Burghausen II | 3:2 | ||||
| 23. Round | 28/03/2007 | FC Ismaning | - | 1. FC Bad Kötzting | 3:0 | ||||
| 29. Round | 31/03/2007 | SpVgg Bayern Hof | - | 1. FC Bad Kötzting | 0:0 | ||||
| 30. Round | 07/04/2007 | 1. FC Bad Kötzting | - | SpVgg Unterhaching II | 1:1 | ||||
| 31. Round | 14/04/2007 | SpVgg Greuther Fürth II | - | 1. FC Bad Kötzting | 3:1 | ||||
| 32. Round | 21/04/2007 | 1. FC Bad Kötzting | - | SpVgg Weiden | 0:0 | ||||
| 34. Round | 05/05/2007 | TSV Großbardorf | - | 1. FC Bad Kötzting | 1:1 | ||||
| 35. Round | 12/05/2007 | 1. FC Bad Kötzting | - | 1. FC Eintracht Bamberg | 4:2 |  |
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| 37. Round | 25/05/2007 | 1. FC Bad Kötzting | - | 1. SC Feucht | 4:0 |  |
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| 38. Round | 02/06/2007 | SV Heimstetten | - | 1. FC Bad Kötzting | 4:2 |
Czech Republic