| 1. Round | 17/07/2016 | FC Pipinsried | - | 1. FC Sonthofen | 0:1 | ||||
| 2. Round | 20/07/2016 | SV Heimstetten | - | FC Pipinsried | 5:0 | ||||
| 4. Round | 31/07/2016 | FC Pipinsried | - | TSV Landsberg | 2:1 | ||||
| 6. Round | 07/08/2016 | FC Pipinsried | - | FC Unterföhring | 1:2 | ||||
| 9. Round | 27/08/2016 | SV Kirchanschöring | - | FC Pipinsried | 0:2 | ||||
| 10. Round | 04/09/2016 | FC Pipinsried | - | TSV 1896 Rain | 2:0 | ||||
| 11. Round | 10/09/2016 | FC Gundelfingen | - | FC Pipinsried | 2:3 | ||||
| 18. Round | 29/10/2016 | 1. FC Sonthofen | - | FC Pipinsried | 1:2 | ||||
| 22. Round | 27/11/2016 | FC Pipinsried | - | TSV 1883 Bogen | 1:0 |
Kosovo