| 2. Round | 05/09/1948 | TuS Bremerhaven 93 | - | FC St. Pauli | 3:0 | ||||
| 2. Round | 12/09/1948 | FC St. Pauli | - | Eimsbütteler TV | 5:1 |  |
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| 2. Round | 19/09/1948 | VfL Osnabrück | - | FC St. Pauli | 0:1 | ||||
| 3. Round | 10/10/1948 | FC St. Pauli | - | Bremer SV | 4:1 | ||||
| 3. Round | 31/10/1948 | Hamburger SV | - | FC St. Pauli | 0:2 | ||||
| 4. Round | 14/11/1948 | FC St. Pauli | - | TSV Braunschweig | 2:1 | ||||
| 4. Round | 21/11/1948 | FC St. Pauli | - | SC Göttingen 05 | 2:2 | |
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| 5. Round | 03/12/1948 | Werder Bremen | - | FC St. Pauli | 0:4 | ||||
| 5. Round | 12/12/1948 | FC St. Pauli | - | Arminia Hannover | 1:2 | ||||
| 6. Round | 09/01/1949 | Concordia Hamburg | - | FC St. Pauli | 2:3 | |
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| 6. Round | 16/01/1949 | Braunschweiger TSV Eintracht | - | FC St. Pauli | 3:1 | ||||
| 6. Round | 30/01/1949 | FC St. Pauli | - | VfB Lübeck | 3:0 | ||||
| 7. Round | 06/02/1949 | Bremer SV | - | FC St. Pauli | 1:2 | ||||
| 8. Round | 06/03/1949 | Eimsbütteler TV | - | FC St. Pauli | 0:6 | |
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| 8. Round | 27/03/1949 | Arminia Hannover | - | FC St. Pauli | 1:1 | ||||
| 9. Round | 03/04/1949 | FC St. Pauli | - | Hamburger SV | 2:1 | ||||
| 10. Round | 01/05/1949 | FC St. Pauli | - | Werder Bremen | 2:0 |
Germany