| 1. Round | 08/03/1959 | SC Motor Jena | - | BSG Motor Zwickau | 1:1 | ||||
| 2. Round | 15/03/1959 | SC Dynamo Berlin | - | SC Motor Jena | 1:0 | ||||
| 3. Round | 22/03/1959 | SC Wismut Karl-Marx-Stadt | - | SC Motor Jena | 1:1 | ||||
| 4. Round | 05/04/1959 | SC Motor Jena | - | Fortschritt Weißenfels | 0:0 | ||||
| 5. Round | 08/04/1959 | SC Motor Jena | - | SC Lokomotive Leipzig | 0:0 | ||||
| 6. Round | 12/04/1959 | BSG Lokomotive Stendal | - | SC Motor Jena | 0:1 | ||||
| 7. Round | 19/04/1959 | SC Motor Jena | - | SC Turbine Erfurt | 2:1 | ||||
| 9. Round | 10/05/1959 | SC Empor Rostock | - | SC Motor Jena | 2:1 | ||||
| 14. Round | 02/08/1959 | BSG Motor Zwickau | - | SC Motor Jena | 3:0 | ||||
| 15. Round | 09/08/1959 | SC Motor Jena | - | SC Dynamo Berlin | 1:1 | ||||
| 16. Round | 23/08/1959 | SC Lokomotive Leipzig | - | SC Motor Jena | 2:1 | ||||
| 19. Round | 11/10/1959 | SC Turbine Erfurt | - | SC Motor Jena | 0:1 | ||||
| 20. Round | 18/10/1959 | SC Motor Jena | - | BSG Lokomotive Stendal | 1:1 | ||||
| 21. Round | 24/10/1959 | BSG Chemie Zeitz | - | SC Motor Jena | 2:3 |
Germany