| 4. Round | 30/07/2016 | SpVgg Hankofen-Hailing | - | FC Gundelfingen | 2:2 |  |
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| 12. Round | 17/09/2016 | TSV Landsberg | - | FC Gundelfingen | 3:1 | ||||
| 14. Round | 30/09/2016 | FC Unterföhring | - | FC Gundelfingen | 3:2 | ||||
| 15. Round | 08/10/2016 | FC Gundelfingen | - | SV Pullach | 0:0 | ||||
| 16. Round | 15/10/2016 | TSV 1865 Dachau | - | FC Gundelfingen | 0:1 |  |
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| 17. Round | 22/10/2016 | FC Gundelfingen | - | SV Kirchanschöring | 0:0 | ||||
| 18. Round | 29/10/2016 | FC Gundelfingen | - | TSV 1896 Rain | 1:2 | ||||
| 20. Round | 13/11/2016 | Jahn Regensburg II | - | FC Gundelfingen | 4:1 | ||||
| 21. Round | 19/11/2016 | FC Gundelfingen | - | SpVgg Hankofen-Hailing | 4:1 |
Germany