| 3. Round | 04/08/2012 | VfB Stuttgart II | - | Karlsruher SC | 2:0 | ||||
| 4. Round | 07/08/2012 | Rot-Weiß Erfurt | - | VfB Stuttgart II | 1:1 | ||||
| 8. Round | 01/09/2012 | Preußen Münster | - | VfB Stuttgart II | 0:0 | ||||
| 12. Round | 29/09/2012 | SV Wehen Wiesbaden | - | VfB Stuttgart II | 0:0 | ||||
| 19. Round | 24/11/2012 | Borussia Dortmund II | - | VfB Stuttgart II | 0:2 |  |
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| 20. Round | 01/12/2012 | 1. FC Saarbrücken | - | VfB Stuttgart II | 0:0 | ||||
| 22. Round | 15/12/2012 | Karlsruher SC | - | VfB Stuttgart II | 3:1 | |
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| 24. Round | 02/02/2013 | Stuttgarter Kickers | - | VfB Stuttgart II | 3:0 | ||||
| 25. Round | 12/03/2013 | VfB Stuttgart II | - | SpVgg Unterhaching | 0:0 | ||||
| 32. Round | 06/04/2013 | 1. FC Heidenheim 1846 | - | VfB Stuttgart II | 1:0 | ||||
| 26. Round | 10/04/2013 | SV Babelsberg 03 | - | VfB Stuttgart II | 0:0 | |
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| 27. Round | 16/04/2013 | VfB Stuttgart II | - | Preußen Münster | 0:1 | ||||
| 34. Round | 20/04/2013 | VfB Stuttgart II | - | Wacker Burghausen | 0:0 | ||||
| 36. Round | 03/05/2013 | VfB Stuttgart II | - | Arminia Bielefeld | 0:1 | ||||
| 38. Round | 18/05/2013 | VfB Stuttgart II | - | Borussia Dortmund II | 0:1 |
Germany