| 24. Round | 24/02/2007 | FC Memmingen | - | Würzburger FV | 2:0 |  |
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| 25. Round | 03/03/2007 | Würzburger FV | - | 1. SC Feucht | 5:2 | ||||
| 26. Round | 10/03/2007 | SV Heimstetten | - | Würzburger FV | 1:1 | ||||
| 27. Round | 17/03/2007 | Würzburger FV | - | TSV Aindling | 3:0 | |
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| 29. Round | 01/04/2007 | 1. FC Nürnberg II | - | Würzburger FV | 0:0 | ||||
| 30. Round | 07/04/2007 | Würzburger FV | - | FC Ismaning | 3:1 | ||||
| 31. Round | 14/04/2007 | SpVgg Bayreuth | - | Würzburger FV | 2:0 | ||||
| 32. Round | 21/04/2007 | Würzburger FV | - | VfL Frohnlach | 0:2 | ||||
| 33. Round | 29/04/2007 | SC Fürstenfeldbruck | - | Würzburger FV | 2:2 |  |
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| 34. Round | 04/05/2007 | Würzburger FV | - | Jahn Regensburg | 1:3 | ||||
| 35. Round | 12/05/2007 | Wacker Burghausen II | - | Würzburger FV | 0:2 | ||||
| 36. Round | 19/05/2007 | Würzburger FV | - | SpVgg Bayern Hof | 1:0 | ||||
| 38. Round | 02/06/2007 | Würzburger FV | - | SpVgg Greuther Fürth II | 2:0 |
Germany