| 2. Round | 18/08/2013 | Hannover 96 [Youth B] | - | FC St. Pauli [Youth B] | 1:1 | ||||
| 5. Round | 07/09/2013 | FC St. Pauli [Youth B] | - | Hamburger SV [Youth B] | 1:2 |  |
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| 3. Round | 28/09/2013 | FC St. Pauli [Youth B] | - | Werder Bremen [Youth B] | 1:4 | ||||
| 8. Round | 19/10/2013 | RB Leipzig [Youth B] | - | FC St. Pauli [Youth B] | 2:0 | ||||
| 10. Round | 02/11/2013 | FC St. Pauli [Youth B] | - | Energie Cottbus [Youth B] | 0:0 | ||||
| 12. Round | 17/11/2013 | FC St. Pauli [Youth B] | - | VfL Osnabrück [Youth B] | 3:1 | ||||
| 15. Round | 08/02/2014 | FC St. Pauli [Youth B] | - | Hannover 96 [Youth B] | 1:0 | ||||
| 16. Round | 16/02/2014 | Werder Bremen [Youth B] | - | FC St. Pauli [Youth B] | 2:1 | ||||
| 18. Round | 08/03/2014 | Hamburger SV [Youth B] | - | FC St. Pauli [Youth B] | 2:2 | ||||
| 21. Round | 06/04/2014 | FC St. Pauli [Youth B] | - | RB Leipzig [Youth B] | 1:3 | ||||
| 26. Round | 15/06/2014 | FC St. Pauli [Youth B] | - | Dynamo Dresden [Youth B] | 0:1 |
Germany