| 21. Round | 18/02/2017 | Bor. Mönchengladbach II | - | Fortuna Düsseldorf II | 0:0 | ||||
| 22. Round | 25/02/2017 | Rot-Weiss Essen | - | Fortuna Düsseldorf II | 0:0 |  |
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| 23. Round | 04/03/2017 | Fortuna Düsseldorf II | - | SV Rödinghausen | 4:3 |  |
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| 24. Round | 11/03/2017 | Rot Weiss Ahlen | - | Fortuna Düsseldorf II | 1:0 | ||||
| 25. Round | 18/03/2017 | Fortuna Düsseldorf II | - | SC Verl | 2:3 | |
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| 29. Round | 22/03/2017 | Fortuna Düsseldorf II | - | 1. FC Köln II | 1:2 | ||||
| 27. Round | 01/04/2017 | Fortuna Düsseldorf II | - | Borussia Dortmund II | 3:2 | ||||
| 26. Round | 04/04/2017 | Alemannia Aachen | - | Fortuna Düsseldorf II | 1:1 | ||||
| 28. Round | 09/04/2017 | FC Schalke 04 II | - | Fortuna Düsseldorf II | 4:0 | ||||
| 30. Round | 21/04/2017 | Sportfreunde Siegen | - | Fortuna Düsseldorf II | 0:3 | ||||
| 31. Round | 30/04/2017 | Fortuna Düsseldorf II | - | SG Wattenscheid 09 | 2:0 | |
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| 32. Round | 05/05/2017 | Rot-Weiß Oberhausen | - | Fortuna Düsseldorf II | 1:1 | |
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| 33. Round | 13/05/2017 | Fortuna Düsseldorf II | - | TSG Sprockhövel | 2:1 | ||||
| 34. Round | 20/05/2017 | SC Wiedenbrück | - | Fortuna Düsseldorf II | 1:2 | |
Japan