| 25. Round | 20/03/2016 | FSV 63 Luckenwalde | - | FC Carl Zeiss Jena | 0:2 | ||||
| 26. Round | 03/04/2016 | FC Carl Zeiss Jena | - | Wacker Nordhausen | 0:0 | ||||
| 20. Round | 06/04/2016 | FC Carl Zeiss Jena | - | BFC Dynamo | 2:1 | ||||
| 27. Round | 10/04/2016 | TSG Neustrelitz | - | FC Carl Zeiss Jena | 0:0 | ||||
| 28. Round | 16/04/2016 | FC Carl Zeiss Jena | - | Hertha BSC II | 3:5 | ||||
| 30. Round | 23/04/2016 | FC Carl Zeiss Jena | - | RB Leipzig II | 1:3 | ||||
| 32. Round | 06/05/2016 | FC Carl Zeiss Jena | - | SV Babelsberg 03 | 0:2 | ||||
| 34. Round | 21/05/2016 | FC Carl Zeiss Jena | - | Germania Halberstadt | 5:2 |
Germany