| 5. Round | 27/08/2016 | Jahn Regensburg | - | VfR Aalen | 0:2 | ||||
| 6. Round | 09/09/2016 | VfR Aalen | - | Hansa Rostock | 1:1 | ||||
| 7. Round | 17/09/2016 | SG Sonnenhof Großaspach | - | VfR Aalen | 2:2 | ||||
| 8. Round | 20/09/2016 | VfR Aalen | - | Hallescher FC | 1:1 | ||||
| 9. Round | 24/09/2016 | FSV Frankfurt | - | VfR Aalen | 2:1 | ||||
| 10. Round | 01/10/2016 | VfR Aalen | - | Preußen Münster | 1:0 |  |
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| 15. Round | 18/11/2016 | VfR Aalen | - | VfL Osnabrück | 1:1 |  |
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| 17. Round | 03/12/2016 | VfR Aalen | - | 1. FSV Mainz 05 II | 0:0 | ||||
| 18. Round | 10/12/2016 | 1. FC Magdeburg | - | VfR Aalen | 3:0 | ||||
| 19. Round | 17/12/2016 | VfR Aalen | - | Werder Bremen II | 3:0 | ||||
| 33. Round | 15/04/2017 | VfR Aalen | - | SC Paderborn 07 | 4:0 | ||||
| 34. Round | 22/04/2017 | VfL Osnabrück | - | VfR Aalen | 1:0 | ||||
| 35. Round | 29/04/2017 | VfR Aalen | - | MSV Duisburg | 2:1 | |
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| 36. Round | 06/05/2017 | 1. FSV Mainz 05 II | - | VfR Aalen | 2:0 | ||||
| 37. Round | 13/05/2017 | VfR Aalen | - | 1. FC Magdeburg | 2:2 |  |
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| 38. Round | 20/05/2017 | Werder Bremen II | - | VfR Aalen | 1:0 |
Germany