| 10. Round | 07/11/1987 | 1. FC Magdeburg | - | FC Carl Zeiss Jena | 1:1 |  |
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| 11. Round | 21/11/1987 | FC Carl Zeiss Jena | - | 1. FC Lokomotive Leipzig | 2:2 | ||||
| 12. Round | 05/12/1987 | Hansa Rostock | - | FC Carl Zeiss Jena | 2:4 | |
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| 13. Round | 12/12/1987 | FC Carl Zeiss Jena | - | Dynamo Dresden | 1:2 | ||||
| 16. Round | 12/03/1988 | FC Carl Zeiss Jena | - | FC Vorwärts Frankfurt/Oder | 2:1 | ||||
| 14. Round | 15/03/1988 | FC Carl Zeiss Jena | - | HFC Chemie | 0:0 | ||||
| 18. Round | 26/03/1988 | FC Carl Zeiss Jena | - | BSG Stahl Brandenburg | 1:1 | ||||
| 20. Round | 06/04/1988 | BSG Stahl Riesa | - | FC Carl Zeiss Jena | 0:1 | ||||
| 21. Round | 16/04/1988 | FC Carl Zeiss Jena | - | Rot-Weiß Erfurt | 2:0 | ||||
| 19. Round | 16/04/1988 | FC Carl Zeiss Jena | - | BFC Dynamo | 2:3 | ||||
| 22. Round | 23/04/1988 | BSG Wismut Aue | - | FC Carl Zeiss Jena | 0:0 | ||||
| 24. Round | 14/05/1988 | 1. FC Lokomotive Leipzig | - | FC Carl Zeiss Jena | 0:0 | ||||
| 25. Round | 21/05/1988 | FC Carl Zeiss Jena | - | Hansa Rostock | 0:1 |
Germany