| 24. Round | 24/02/2007 | SpVgg Bayern Hof | - | Wacker Burghausen II | 5:0 | ||||
| 25. Round | 03/03/2007 | Wacker Burghausen II | - | SpVgg Unterhaching II | 1:0 | ||||
| 26. Round | 10/03/2007 | SpVgg Greuther Fürth II | - | Wacker Burghausen II | 2:3 | ||||
| 27. Round | 17/03/2007 | Wacker Burghausen II | - | SpVgg Weiden | 0:1 | ||||
| 28. Round | 24/03/2007 | 1. FC Bad Kötzting | - | Wacker Burghausen II | 3:2 | ||||
| 29. Round | 31/03/2007 | Wacker Burghausen II | - | TSV Großbardorf | 3:1 | ||||
| 30. Round | 07/04/2007 | 1. FC Eintracht Bamberg | - | Wacker Burghausen II | 3:0 | ||||
| 31. Round | 14/04/2007 | Wacker Burghausen II | - | FC Memmingen | 0:5 | ||||
| 32. Round | 21/04/2007 | 1. SC Feucht | - | Wacker Burghausen II | 2:4 | ||||
| 33. Round | 28/04/2007 | Wacker Burghausen II | - | SV Heimstetten | 3:1 | ||||
| 34. Round | 06/05/2007 | TSV Aindling | - | Wacker Burghausen II | 2:0 | ||||
| 35. Round | 12/05/2007 | Wacker Burghausen II | - | Würzburger FV | 0:2 | ||||
| 36. Round | 20/05/2007 | 1. FC Nürnberg II | - | Wacker Burghausen II | 4:1 | ||||
| 37. Round | 26/05/2007 | Wacker Burghausen II | - | FC Ismaning | 0:2 |
Germany