| 1. Round | 13/08/1988 | FC Karl-Marx-Stadt | - | 1. FC Magdeburg | 1:0 |  |
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| 2. Round | 20/08/1988 | 1. FC Magdeburg | - | Dynamo Dresden | 0:2 | ||||
| 6. Round | 24/09/1988 | 1. FC Magdeburg | - | 1. FC Lokomotive Leipzig | 1:0 |  |
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| 7. Round | 01/10/1988 | BSG Energie Cottbus | - | 1. FC Magdeburg | 3:1 | ||||
| 10. Round | 04/11/1988 | 1. FC Magdeburg | - | HFC Chemie | 2:0 | ||||
| 11. Round | 12/11/1988 | BSG Wismut Aue | - | 1. FC Magdeburg | 1:0 | ||||
| 12. Round | 19/11/1988 | 1. FC Magdeburg | - | 1. FC Union Berlin | 3:1 | ||||
| 15. Round | 04/03/1989 | Dynamo Dresden | - | 1. FC Magdeburg | 0:0 | |
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| 17. Round | 25/03/1989 | BSG Sachsenring Zwickau | - | 1. FC Magdeburg | 1:0 | ||||
| 18. Round | 05/04/1989 | 1. FC Magdeburg | - | BFC Dynamo | 2:2 | ||||
| 19. Round | 15/04/1989 | 1. FC Lokomotive Leipzig | - | 1. FC Magdeburg | 2:2 | ||||
| 20. Round | 18/04/1989 | 1. FC Magdeburg | - | BSG Energie Cottbus | 2:1 | ||||
| 21. Round | 29/04/1989 | FC Carl Zeiss Jena | - | 1. FC Magdeburg | 3:0 | ||||
| 22. Round | 06/05/1989 | 1. FC Magdeburg | - | Hansa Rostock | 1:0 | ||||
| 23. Round | 10/05/1989 | HFC Chemie | - | 1. FC Magdeburg | 0:2 |
Germany