| 3. Round | 23/08/2015 | FC Viktoria 1889 Berlin [Youth] | - | FC St. Pauli [Youth] | 2:3 | ||||
| 4. Round | 29/08/2015 | FC St. Pauli [Youth] | - | VfL Wolfsburg [Youth] | 0:11 | ||||
| 5. Round | 12/09/2015 | Holstein Kiel [Youth] | - | FC St. Pauli [Youth] | 0:1 | ||||
| 7. Round | 27/09/2015 | FC St. Pauli [Youth] | - | TSV Havelse [Youth] | 6:1 | ||||
| 8. Round | 01/10/2015 | Hamburger SV [Youth] | - | FC St. Pauli [Youth] | 3:1 | ||||
| 9. Round | 31/10/2015 | FC St. Pauli [Youth] | - | Hannover 96 [Youth] | 0:4 | ||||
| 14. Round | 13/12/2015 | FC St. Pauli [Youth] | - | Energie Cottbus [Youth] | 2:2 | ||||
| 19. Round | 06/03/2016 | RB Leipzig [Youth] | - | FC St. Pauli [Youth] | 1:0 | ||||
| 20. Round | 13/03/2016 | TSV Havelse [Youth] | - | FC St. Pauli [Youth] | 0:2 | ||||
| 21. Round | 02/04/2016 | FC St. Pauli [Youth] | - | Hamburger SV [Youth] | 0:2 | ||||
| 22. Round | 10/04/2016 | Hannover 96 [Youth] | - | FC St. Pauli [Youth] | 3:1 |  |
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| 24. Round | 24/04/2016 | Eintracht Braunschweig [Youth] | - | FC St. Pauli [Youth] | 2:2 | ||||
| 25. Round | 30/04/2016 | FC St. Pauli [Youth] | - | Rot-Weiß Erfurt [Youth] | 1:0 |
Germany