| 1. Round | 30/07/2016 | Bonner SC | - | Fortuna Düsseldorf II | 2:1 | ||||
| 3. Round | 09/08/2016 | Viktoria Köln | - | Fortuna Düsseldorf II | 2:0 | ||||
| 6. Round | 27/08/2016 | SV Rödinghausen | - | Fortuna Düsseldorf II | 2:1 | ||||
| 7. Round | 03/09/2016 | Fortuna Düsseldorf II | - | Rot Weiss Ahlen | 1:0 | ||||
| 14. Round | 21/10/2016 | SG Wattenscheid 09 | - | Fortuna Düsseldorf II | 2:0 | ||||
| 15. Round | 29/10/2016 | Fortuna Düsseldorf II | - | Rot-Weiß Oberhausen | 1:2 |  |
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| 16. Round | 05/11/2016 | TSG Sprockhövel | - | Fortuna Düsseldorf II | 3:3 | ||||
| 19. Round | 10/02/2017 | Wuppertaler SV | - | Fortuna Düsseldorf II | 5:1 | ||||
| 22. Round | 25/02/2017 | Rot-Weiss Essen | - | Fortuna Düsseldorf II | 0:0 | ||||
| 24. Round | 11/03/2017 | Rot Weiss Ahlen | - | Fortuna Düsseldorf II | 1:0 | ||||
| 26. Round | 04/04/2017 | Alemannia Aachen | - | Fortuna Düsseldorf II | 1:1 | ||||
| 28. Round | 09/04/2017 | FC Schalke 04 II | - | Fortuna Düsseldorf II | 4:0 | ||||
| 30. Round | 21/04/2017 | Sportfreunde Siegen | - | Fortuna Düsseldorf II | 0:3 |
Germany