| 1. Round | 12/08/1989 | FC Carl Zeiss Jena | - | 1. FC Magdeburg | 0:2 |  |
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| 2. Round | 19/08/1989 | 1. FC Magdeburg | - | Hansa Rostock | 2:1 | ||||
| 3. Round | 01/09/1989 | BFC Dynamo | - | 1. FC Magdeburg | 2:1 | ||||
| 4. Round | 09/09/1989 | 1. FC Magdeburg | - | Stahl Eisenhüttenstadt | 2:1 | ||||
| 5. Round | 16/09/1989 | 1. FC Lokomotive Leipzig | - | 1. FC Magdeburg | 1:2 | |
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| 7. Round | 13/10/1989 | BSG Wismut Aue | - | 1. FC Magdeburg | 0:0 | ||||
| 8. Round | 21/10/1989 | 1. FC Magdeburg | - | Rot-Weiß Erfurt | 1:0 | |
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| 9. Round | 28/10/1989 | BSG Stahl Brandenburg | - | 1. FC Magdeburg | 0:1 | ||||
| 10. Round | 08/11/1989 | Dynamo Dresden | - | 1. FC Magdeburg | 3:1 | ||||
| 11. Round | 18/11/1989 | 1. FC Magdeburg | - | BSG Energie Cottbus | 4:1 | ||||
| 14. Round | 23/02/1990 | 1. FC Magdeburg | - | FC Carl Zeiss Jena | 0:2 | ||||
| 15. Round | 03/03/1990 | Hansa Rostock | - | 1. FC Magdeburg | 0:0 | |
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| 21. Round | 21/04/1990 | Rot-Weiß Erfurt | - | 1. FC Magdeburg | 1:1 | ||||
| 23. Round | 05/05/1990 | 1. FC Magdeburg | - | Dynamo Dresden | 1:1 | ||||
| 25. Round | 18/05/1990 | 1. FC Magdeburg | - | HFC Chemie | 3:1 |
Germany