| 5. Round | 20/08/2017 | Sportfreunde Lotte | - | FC Carl Zeiss Jena | 4:0 | ||||
| 6. Round | 26/08/2017 | FC Carl Zeiss Jena | - | SG Sonnenhof Großaspach | 0:0 | ||||
| 20. Round | 16/12/2017 | FC Carl Zeiss Jena | - | SV Wehen Wiesbaden | 4:3 | ||||
| 21. Round | 20/01/2018 | Fortuna Köln | - | FC Carl Zeiss Jena | 1:0 | ||||
| 22. Round | 28/01/2018 | FC Carl Zeiss Jena | - | Hallescher FC | 2:1 | ||||
| 23. Round | 03/02/2018 | Chemnitzer FC | - | FC Carl Zeiss Jena | 1:0 | ||||
| 29. Round | 10/03/2018 | Preußen Münster | - | FC Carl Zeiss Jena | 2:2 | ||||
| 31. Round | 24/03/2018 | Hansa Rostock | - | FC Carl Zeiss Jena | 0:0 |  |
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| 32. Round | 31/03/2018 | FC Carl Zeiss Jena | - | FSV Zwickau | 2:1 | ||||
| 27. Round | 04/04/2018 | SV Meppen | - | FC Carl Zeiss Jena | 2:1 | ||||
| 33. Round | 07/04/2018 | SC Paderborn 07 | - | FC Carl Zeiss Jena | 6:0 | ||||
| 34. Round | 14/04/2018 | FC Carl Zeiss Jena | - | VfR Aalen | 3:2 | ||||
| 30. Round | 17/04/2018 | FC Carl Zeiss Jena | - | 1. FC Magdeburg | 1:5 | ||||
| 36. Round | 28/04/2018 | VfL Osnabrück | - | FC Carl Zeiss Jena | 1:2 |  |
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| 37. Round | 05/05/2018 | FC Carl Zeiss Jena | - | SpVgg Unterhaching | 2:1 | ||||
| 38. Round | 12/05/2018 | Karlsruher SC | - | FC Carl Zeiss Jena | 2:3 |
Germany