| 7. Round | 01/10/2006 | Hertha BSC [Youth] | - | Hansa Rostock [Youth] | 3:2 | ||||
| 8. Round | 15/10/2006 | Hansa Rostock [Youth] | - | Hannover 96 [Youth] | 1:0 | ||||
| 9. Round | 28/10/2006 | SG Sachsen Leipzig [Youth] | - | Hansa Rostock [Youth] | 2:2 |  |
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| 10. Round | 04/11/2006 | Hansa Rostock [Youth] | - | Hamburger SV [Youth] | 0:3 | ||||
| 11. Round | 12/11/2006 | Rot-Weiß Erfurt [Youth] | - | Hansa Rostock [Youth] | 3:1 | |
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| 12. Round | 25/11/2006 | Tasmania Gropiusstadt [Youth] | - | Hansa Rostock [Youth] | 1:0 | ||||
| 13. Round | 03/12/2006 | Hansa Rostock [Youth] | - | Holstein Kiel [Youth] | 2:0 |  |
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| 15. Round | 24/02/2007 | Werder Bremen [Youth] | - | Hansa Rostock [Youth] | 3:1 | ||||
| 16. Round | 04/03/2007 | Hansa Rostock [Youth] | - | VfL Wolfsburg [Youth] | 0:2 | |
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| 21. Round | 21/04/2007 | Hannover 96 [Youth] | - | Hansa Rostock [Youth] | 0:1 | ||||
| 22. Round | 28/04/2007 | Hansa Rostock [Youth] | - | SG Sachsen Leipzig [Youth] | 5:2 | |
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| 23. Round | 01/05/2007 | Hamburger SV [Youth] | - | Hansa Rostock [Youth] | 2:2 | ||||
| 24. Round | 20/05/2007 | Hansa Rostock [Youth] | - | Rot-Weiß Erfurt [Youth] | 2:3 | |
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Germany