| 19. Round | 11/02/2017 | 1. FC Kaan-Marienborn | - | FC Brünninghausen | 0:1 |  |
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| 20. Round | 19/02/2017 | FC Brünninghausen | - | SC Paderborn 07 II | 2:0 | ||||
| 21. Round | 05/03/2017 | SuS Stadtlohn | - | FC Brünninghausen | 1:0 | ||||
| 23. Round | 19/03/2017 | Roland Beckum | - | FC Brünninghausen | 1:3 |  |
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| 24. Round | 26/03/2017 | FC Brünninghausen | - | Hammer SpVg | 0:1 | ||||
| 25. Round | 02/04/2017 | FC Brünninghausen | - | FCE Rheine | 4:3 | ||||
| 26. Round | 09/04/2017 | FC Brünninghausen | - | TSV Marl-Hüls | 4:2 | ||||
| 29. Round | 23/04/2017 | FC Gütersloh 2000 | - | FC Brünninghausen | 1:1 | ||||
| 30. Round | 30/04/2017 | FC Brünninghausen | - | Arminia Bielefeld II | 3:2 | ||||
| 31. Round | 07/05/2017 | SV Lippstadt 08 | - | FC Brünninghausen | 1:1 |
Spain