| 1. Round | 19/07/2012 | Eintracht Bamberg | - | SpVgg Bayern Hof | 1:0 |  |
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| 2. Round | 25/07/2012 | SpVgg Bayern Hof | - | Bayern München II | 0:0 | |
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| 3. Round | 28/07/2012 | FC Ismaning | - | SpVgg Bayern Hof | 0:1 | ||||
| 4. Round | 03/08/2012 | SpVgg Bayern Hof | - | SpVgg Greuther Fürth II | 1:1 | ||||
| 5. Round | 08/08/2012 | Viktoria Aschaffenburg | - | SpVgg Bayern Hof | 2:0 | ||||
| 6. Round | 11/08/2012 | SpVgg Bayern Hof | - | TSV 1896 Rain | 0:2 | ||||
| 8. Round | 18/08/2012 | SpVgg Bayern Hof | - | Würzburger Kickers | 0:2 | ||||
| 9. Round | 24/08/2012 | FC Augsburg II | - | SpVgg Bayern Hof | 1:1 |  |
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| 7. Round | 19/09/2012 | SV Seligenporten | - | SpVgg Bayern Hof | 3:2 | ||||
| 13. Round | 22/09/2012 | SpVgg Bayern Hof | - | SC Eltersdorf | 1:1 | ||||
| 14. Round | 28/09/2012 | FC Memmingen | - | SpVgg Bayern Hof | 1:0 | ||||
| 16. Round | 06/10/2012 | TSV 1860 Rosenheim | - | SpVgg Bayern Hof | 1:0 | |
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| 17. Round | 13/10/2012 | SpVgg Bayern Hof | - | 1. FC Nürnberg II | 2:3 | ||||
| 20. Round | 03/11/2012 | SpVgg Bayern Hof | - | Eintracht Bamberg | 3:1 | ||||
| 23. Round | 25/11/2012 | SpVgg Greuther Fürth II | - | SpVgg Bayern Hof | 2:2 |
Germany