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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 22 | 14 | 3 | 5 | 28:12 | 16 | 45 |
| 2 |
|
FC St. Pauli | 22 | 14 | 2 | 6 | 25:14 | 11 | 44 |
| 3 |
|
Fortuna Düsseldorf | 22 | 12 | 6 | 4 | 28:13 | 15 | 42 |
| 4 |
|
Eintracht Frankfurt | 22 | 11 | 8 | 3 | 29:13 | 16 | 41 |
| 5 |
|
SC Paderborn 07 | 22 | 11 | 6 | 5 | 21:14 | 7 | 39 |
| 6 |
|
TSV 1860 München | 22 | 10 | 7 | 5 | 24:15 | 9 | 37 |
| 7 |
|
1. FC Union Berlin | 22 | 8 | 5 | 9 | 22:22 | 0 | 29 |
| 8 |
|
Eintracht Braunschweig | 22 | 6 | 11 | 5 | 11:11 | 0 | 29 |
| 9 |
|
MSV Duisburg | 22 | 7 | 8 | 7 | 15:16 | -1 | 29 |
| 10 |
|
Dynamo Dresden | 22 | 6 | 7 | 9 | 20:28 | -8 | 25 |
| 11 |
|
Erzgebirge Aue | 22 | 5 | 9 | 8 | 12:16 | -4 | 24 |
| 12 |
|
FC Ingolstadt 04 | 22 | 5 | 8 | 9 | 12:24 | -12 | 23 |
| 13 |
|
Energie Cottbus | 22 | 5 | 7 | 10 | 14:19 | -5 | 22 |
| 14 |
|
Karlsruher SC | 22 | 6 | 4 | 12 | 12:19 | -7 | 22 |
| 15 |
|
FSV Frankfurt | 22 | 5 | 7 | 10 | 14:26 | -12 | 22 |
| 16 |
|
VfL Bochum | 22 | 4 | 9 | 9 | 15:21 | -6 | 21 |
| 17 |
|
Alemannia Aachen | 22 | 2 | 12 | 8 | 9:18 | -9 | 18 |
| 18 |
|
Hansa Rostock | 22 | 3 | 9 | 10 | 12:22 | -10 | 18 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
