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| Tables | Home | Away | First round | Second round | » First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 24 | 13 | 8 | 3 | 21:7 | 14 | 47 |
| 2 |
|
Eintracht Frankfurt | 24 | 12 | 7 | 5 | 23:11 | 12 | 43 |
| 3 |
|
FC St. Pauli | 24 | 10 | 10 | 4 | 18:10 | 8 | 40 |
| 4 |
|
TSV 1860 München | 24 | 11 | 6 | 7 | 20:15 | 5 | 39 |
| 5 |
|
1. FC Union Berlin | 24 | 10 | 9 | 5 | 17:15 | 2 | 39 |
| 6 |
|
Fortuna Düsseldorf | 24 | 9 | 10 | 5 | 20:11 | 9 | 37 |
| 7 |
|
Dynamo Dresden | 24 | 9 | 10 | 5 | 19:13 | 6 | 37 |
| 8 |
|
SC Paderborn 07 | 24 | 8 | 12 | 4 | 16:12 | 4 | 36 |
| 9 |
|
Eintracht Braunschweig | 24 | 9 | 7 | 8 | 18:15 | 3 | 34 |
| 10 |
|
VfL Bochum | 24 | 8 | 9 | 7 | 18:16 | 2 | 33 |
| 11 |
|
Alemannia Aachen | 24 | 6 | 13 | 5 | 11:10 | 1 | 31 |
| 12 |
|
Energie Cottbus | 24 | 6 | 10 | 8 | 8:16 | -8 | 28 |
| 13 |
|
FSV Frankfurt | 24 | 6 | 8 | 10 | 13:21 | -8 | 26 |
| 14 |
|
FC Ingolstadt 04 | 24 | 4 | 10 | 10 | 12:19 | -7 | 22 |
| 15 |
|
Hansa Rostock | 24 | 3 | 12 | 9 | 8:14 | -6 | 21 |
| 16 |
|
MSV Duisburg | 24 | 3 | 11 | 10 | 12:18 | -6 | 20 |
| 17 |
|
Erzgebirge Aue | 24 | 0 | 15 | 9 | 9:22 | -13 | 15 |
| 18 |
|
Karlsruher SC | 24 | 2 | 7 | 15 | 11:29 | -18 | 13 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
