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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 28 | 18 | 4 | 6 | 38:14 | 24 | 58 |
| 2 |
|
Fortuna Düsseldorf | 28 | 16 | 8 | 4 | 35:13 | 22 | 56 |
| 3 |
|
Eintracht Frankfurt | 28 | 14 | 10 | 4 | 36:16 | 20 | 52 |
| 4 |
|
SC Paderborn 07 | 28 | 13 | 9 | 6 | 27:18 | 9 | 48 |
| 5 |
|
FC St. Pauli | 28 | 14 | 6 | 8 | 25:17 | 8 | 48 |
| 6 |
|
TSV 1860 München | 28 | 13 | 7 | 8 | 27:19 | 8 | 46 |
| 7 |
|
Dynamo Dresden | 28 | 9 | 9 | 10 | 24:29 | -5 | 36 |
| 8 |
|
MSV Duisburg | 28 | 8 | 11 | 9 | 19:23 | -4 | 35 |
| 9 |
|
FC Ingolstadt 04 | 28 | 8 | 11 | 9 | 21:27 | -6 | 35 |
| 10 |
|
Erzgebirge Aue | 28 | 8 | 10 | 10 | 16:19 | -3 | 34 |
| 11 |
|
1. FC Union Berlin | 28 | 9 | 7 | 12 | 26:30 | -4 | 34 |
| 12 |
|
Eintracht Braunschweig | 28 | 6 | 15 | 7 | 12:14 | -2 | 33 |
| 13 |
|
FSV Frankfurt | 28 | 8 | 8 | 12 | 17:28 | -11 | 32 |
| 14 |
|
Karlsruher SC | 28 | 8 | 6 | 14 | 15:25 | -10 | 30 |
| 15 |
|
Energie Cottbus | 28 | 7 | 8 | 13 | 16:22 | -6 | 29 |
| 16 |
|
Hansa Rostock | 28 | 4 | 12 | 12 | 16:29 | -13 | 24 |
| 17 |
|
VfL Bochum | 28 | 4 | 11 | 13 | 16:28 | -12 | 23 |
| 18 |
|
Alemannia Aachen | 28 | 2 | 14 | 12 | 9:24 | -15 | 20 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
