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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 30 | 19 | 5 | 6 | 40:14 | 26 | 62 |
| 2 |
|
Fortuna Düsseldorf | 30 | 17 | 9 | 4 | 37:14 | 23 | 60 |
| 3 |
|
SC Paderborn 07 | 30 | 15 | 9 | 6 | 30:19 | 11 | 54 |
| 4 |
|
FC St. Pauli | 30 | 16 | 6 | 8 | 28:17 | 11 | 54 |
| 5 |
|
Eintracht Frankfurt | 30 | 14 | 11 | 5 | 37:18 | 19 | 53 |
| 6 |
|
TSV 1860 München | 30 | 14 | 7 | 9 | 30:22 | 8 | 49 |
| 7 |
|
FC Ingolstadt 04 | 30 | 9 | 12 | 9 | 24:29 | -5 | 39 |
| 8 |
|
MSV Duisburg | 30 | 9 | 11 | 10 | 21:25 | -4 | 38 |
| 9 |
|
Dynamo Dresden | 30 | 9 | 10 | 11 | 25:32 | -7 | 37 |
| 10 |
|
Eintracht Braunschweig | 30 | 6 | 17 | 7 | 13:15 | -2 | 35 |
| 11 |
|
Erzgebirge Aue | 30 | 8 | 11 | 11 | 16:20 | -4 | 35 |
| 12 |
|
1. FC Union Berlin | 30 | 9 | 8 | 13 | 26:32 | -6 | 35 |
| 13 |
|
Karlsruher SC | 30 | 9 | 7 | 14 | 17:25 | -8 | 34 |
| 14 |
|
FSV Frankfurt | 30 | 8 | 8 | 14 | 17:30 | -13 | 32 |
| 15 |
|
Energie Cottbus | 30 | 7 | 8 | 15 | 16:25 | -9 | 29 |
| 16 |
|
Hansa Rostock | 30 | 5 | 13 | 12 | 18:30 | -12 | 28 |
| 17 |
|
VfL Bochum | 30 | 4 | 13 | 13 | 16:28 | -12 | 25 |
| 18 |
|
Alemannia Aachen | 30 | 2 | 15 | 13 | 10:26 | -16 | 21 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
