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| Tables | Home | Away | First round | Second round | First half | » Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SpVgg Greuther Fürth | 31 | 19 | 6 | 6 | 41:15 | 26 | 63 |
| 2 |
|
Fortuna Düsseldorf | 31 | 17 | 9 | 5 | 37:15 | 22 | 60 |
| 3 |
|
Eintracht Frankfurt | 31 | 15 | 11 | 5 | 39:18 | 21 | 56 |
| 4 |
|
SC Paderborn 07 | 31 | 15 | 10 | 6 | 31:20 | 11 | 55 |
| 5 |
|
FC St. Pauli | 31 | 16 | 7 | 8 | 29:18 | 11 | 55 |
| 6 |
|
TSV 1860 München | 31 | 15 | 7 | 9 | 32:23 | 9 | 52 |
| 7 |
|
MSV Duisburg | 31 | 10 | 11 | 10 | 23:25 | -2 | 41 |
| 8 |
|
FC Ingolstadt 04 | 31 | 9 | 13 | 9 | 25:30 | -5 | 40 |
| 9 |
|
Dynamo Dresden | 31 | 10 | 10 | 11 | 26:32 | -6 | 40 |
| 10 |
|
Eintracht Braunschweig | 31 | 6 | 18 | 7 | 13:15 | -2 | 36 |
| 11 |
|
1. FC Union Berlin | 31 | 9 | 9 | 13 | 26:32 | -6 | 36 |
| 12 |
|
Erzgebirge Aue | 31 | 8 | 11 | 12 | 16:22 | -6 | 35 |
| 13 |
|
Karlsruher SC | 31 | 9 | 8 | 14 | 18:26 | -8 | 35 |
| 14 |
|
FSV Frankfurt | 31 | 9 | 8 | 14 | 21:30 | -9 | 35 |
| 15 |
|
Energie Cottbus | 31 | 7 | 9 | 15 | 17:26 | -9 | 30 |
| 16 |
|
Hansa Rostock | 31 | 5 | 13 | 13 | 18:34 | -16 | 28 |
| 17 |
|
VfL Bochum | 31 | 4 | 13 | 14 | 17:30 | -13 | 25 |
| 18 |
|
Alemannia Aachen | 31 | 2 | 15 | 14 | 10:28 | -18 | 21 |
| Promotion | |
| Playoffs | |
| Playoffs | |
| Relegation |
