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| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
VfL Osnabrück | 12 | 11 | 0 | 1 | 26:9 | 17 | 33 |
| 2 |
|
Erzgebirge Aue | 12 | 9 | 2 | 1 | 23:8 | 15 | 29 |
| 3 |
|
Eintracht Braunschweig | 11 | 8 | 1 | 2 | 24:11 | 13 | 25 |
| 4 |
|
1. FC Heidenheim 1846 | 12 | 7 | 2 | 3 | 26:17 | 9 | 23 |
| 5 |
|
SV Sandhausen | 12 | 6 | 4 | 2 | 23:15 | 8 | 22 |
| 6 |
|
Rot-Weiß Erfurt | 12 | 6 | 4 | 2 | 16:9 | 7 | 22 |
| 7 |
|
Jahn Regensburg | 12 | 6 | 4 | 2 | 12:7 | 5 | 22 |
| 8 |
|
Wacker Burghausen | 11 | 7 | 1 | 3 | 17:13 | 4 | 22 |
| 9 |
|
FC Ingolstadt 04 | 11 | 6 | 3 | 2 | 29:8 | 21 | 21 |
| 10 |
|
FC Carl Zeiss Jena | 11 | 6 | 2 | 3 | 16:12 | 4 | 20 |
| 11 |
|
Holstein Kiel | 11 | 5 | 4 | 2 | 14:7 | 7 | 19 |
| 12 |
|
Kickers Offenbach | 11 | 5 | 3 | 3 | 19:10 | 9 | 18 |
| 13 |
|
SV Wehen Wiesbaden | 12 | 5 | 3 | 4 | 19:15 | 4 | 18 |
| 14 |
|
SpVgg Unterhaching | 11 | 5 | 3 | 3 | 17:13 | 4 | 18 |
| 15 |
|
Borussia Dortmund II | 11 | 5 | 3 | 3 | 11:7 | 4 | 18 |
| 16 |
|
Bayern München II | 12 | 4 | 6 | 2 | 13:14 | -1 | 18 |
| 17 |
|
Dynamo Dresden | 11 | 5 | 2 | 4 | 18:15 | 3 | 17 |
| 18 |
|
Werder Bremen II | 11 | 5 | 1 | 5 | 20:12 | 8 | 16 |
| 19 |
|
VfB Stuttgart II | 12 | 4 | 2 | 6 | 19:21 | -2 | 14 |
| 20 |
|
Wuppertaler SV | 12 | 3 | 3 | 6 | 12:22 | -10 | 12 |
| Promotion | |
| Playoffs | |
| Relegation |
