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| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
FC Carl Zeiss Jena | 16 | 6 | 5 | 5 | 20:21 | -1 | 23 |
| 2 |
|
FC Ingolstadt 04 | 16 | 7 | 2 | 7 | 21:23 | -2 | 23 |
| 3 |
|
1. FC Heidenheim 1846 | 15 | 6 | 3 | 6 | 23:24 | -1 | 21 |
| 4 |
|
Kickers Offenbach | 16 | 4 | 7 | 5 | 17:17 | 0 | 19 |
| 5 |
|
VfB Stuttgart II | 15 | 6 | 1 | 8 | 17:18 | -1 | 19 |
| 6 |
|
Werder Bremen II | 16 | 5 | 4 | 7 | 16:26 | -10 | 19 |
| 7 |
|
Wuppertaler SV | 15 | 5 | 3 | 7 | 17:18 | -1 | 18 |
| 8 |
|
Eintracht Braunschweig | 16 | 3 | 7 | 6 | 15:18 | -3 | 16 |
| 9 |
|
Rot-Weiß Erfurt | 15 | 4 | 4 | 7 | 15:20 | -5 | 16 |
| 10 |
|
SpVgg Unterhaching | 16 | 4 | 4 | 8 | 19:25 | -6 | 16 |
| 11 |
|
SV Wehen Wiesbaden | 15 | 4 | 4 | 7 | 16:26 | -10 | 16 |
| 12 |
|
Bayern München II | 15 | 5 | 1 | 9 | 21:33 | -12 | 16 |
| 13 |
|
Jahn Regensburg | 15 | 3 | 5 | 7 | 20:22 | -2 | 14 |
| 14 |
|
VfL Osnabrück | 15 | 3 | 5 | 7 | 11:17 | -6 | 14 |
| 15 |
|
Dynamo Dresden | 16 | 3 | 5 | 8 | 10:18 | -8 | 14 |
| 16 |
|
Borussia Dortmund II | 16 | 4 | 2 | 10 | 21:30 | -9 | 14 |
| 17 |
|
SV Sandhausen | 15 | 3 | 5 | 7 | 18:28 | -10 | 14 |
| 18 |
|
Erzgebirge Aue | 15 | 3 | 4 | 8 | 13:26 | -13 | 13 |
| 19 |
|
Wacker Burghausen | 16 | 3 | 4 | 9 | 10:31 | -21 | 13 |
| 20 |
|
Holstein Kiel | 16 | 2 | 1 | 13 | 14:36 | -22 | 7 |
| Promotion | |
| Playoffs | |
| Relegation |
