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| Tables | Home | Away | First round | Second round | » First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
SV Sandhausen (A) | 36 | 17 | 13 | 6 | 28:19 | 9 | 64 |
| 2 |
|
SSV Ulm 1846 (N) | 36 | 15 | 14 | 7 | 26:17 | 9 | 59 |
| 3 |
|
SpVgg Unterhaching (N) | 36 | 13 | 17 | 6 | 26:14 | 12 | 56 |
| 4 |
|
Jahn Regensburg (A) | 36 | 11 | 19 | 6 | 24:15 | 9 | 52 |
| 5 |
|
Borussia Dortmund II | 36 | 12 | 13 | 11 | 27:25 | 2 | 49 |
| 6 |
|
TSV 1860 München | 36 | 11 | 16 | 9 | 19:17 | 2 | 49 |
| 7 |
|
SC Verl | 36 | 11 | 16 | 9 | 26:25 | 1 | 49 |
| 8 |
|
Rot-Weiss Essen | 36 | 12 | 13 | 11 | 22:21 | 1 | 49 |
| 9 |
|
1. FC Saarbrücken | 36 | 10 | 18 | 8 | 23:20 | 3 | 48 |
| 10 |
|
FC Ingolstadt 04 | 36 | 12 | 12 | 12 | 23:23 | 0 | 48 |
| 11 |
|
Preußen Münster (N) | 36 | 9 | 19 | 8 | 27:21 | 6 | 46 |
| 12 |
|
Arminia Bielefeld (A) | 36 | 11 | 13 | 12 | 23:22 | 1 | 46 |
| 13 |
|
Dynamo Dresden | 36 | 9 | 17 | 10 | 24:21 | 3 | 44 |
| 14 |
|
Viktoria Köln | 36 | 9 | 17 | 10 | 19:23 | -4 | 44 |
| 15 |
|
MSV Duisburg | 36 | 9 | 16 | 11 | 21:23 | -2 | 43 |
| 16 |
|
Waldhof Mannheim | 36 | 10 | 11 | 15 | 18:22 | -4 | 41 |
| 17 |
|
Erzgebirge Aue | 36 | 8 | 16 | 12 | 16:22 | -6 | 40 |
| 18 |
|
Hallescher FC | 36 | 8 | 13 | 15 | 24:34 | -10 | 37 |
| 19 |
|
VfB Lübeck (N) | 36 | 7 | 15 | 14 | 13:32 | -19 | 36 |
| 20 |
|
SC Freiburg II | 36 | 6 | 12 | 18 | 17:30 | -13 | 30 |
| Promotion | |
| Playoffs | |
| Relegation |
