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| Tables | Home | Away | First round | Second round | » First half | Second half |
| # | Team | M. | W | D | L | goals | Dif. | Pt. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Energie Cottbus (N) | 26 | 15 | 9 | 2 | 27:12 | 15 | 54 |
| 2 |
|
Erzgebirge Aue | 26 | 11 | 9 | 6 | 25:17 | 8 | 42 |
| 3 |
|
SC Verl | 26 | 9 | 12 | 5 | 20:17 | 3 | 39 |
| 4 |
|
1. FC Saarbrücken | 26 | 9 | 11 | 6 | 20:16 | 4 | 38 |
| 5 |
|
Hansa Rostock (A) | 26 | 10 | 8 | 8 | 14:14 | 0 | 38 |
| 6 |
|
Viktoria Köln | 26 | 10 | 7 | 9 | 16:15 | 1 | 37 |
| 7 |
|
SV Wehen Wiesbaden (A) | 26 | 10 | 7 | 9 | 18:20 | -2 | 37 |
| 8 |
|
FC Ingolstadt 04 | 26 | 9 | 9 | 8 | 23:18 | 5 | 36 |
| 9 |
|
Dynamo Dresden | 26 | 9 | 8 | 9 | 20:17 | 3 | 35 |
| 10 |
|
Alemannia Aachen (N) | 26 | 7 | 13 | 6 | 12:11 | 1 | 34 |
| 11 |
|
VfL Osnabrück (A) | 26 | 7 | 11 | 8 | 17:18 | -1 | 32 |
| 12 |
|
Rot-Weiss Essen | 26 | 7 | 10 | 9 | 16:14 | 2 | 31 |
| 13 |
|
Borussia Dortmund II | 26 | 6 | 13 | 7 | 18:18 | 0 | 31 |
| 14 |
|
VfB Stuttgart II (N) | 26 | 9 | 4 | 13 | 17:23 | -6 | 31 |
| 15 |
|
Arminia Bielefeld | 26 | 6 | 12 | 8 | 11:12 | -1 | 30 |
| 16 |
|
Waldhof Mannheim | 26 | 5 | 14 | 7 | 16:17 | -1 | 29 |
| 17 |
|
SV Sandhausen | 26 | 6 | 11 | 9 | 14:19 | -5 | 29 |
| 18 |
|
Hannover 96 II (N) | 26 | 6 | 11 | 9 | 15:24 | -9 | 29 |
| 19 |
|
TSV 1860 München | 26 | 6 | 8 | 12 | 13:22 | -9 | 26 |
| 20 |
|
SpVgg Unterhaching | 26 | 3 | 13 | 10 | 13:21 | -8 | 22 |
| Promotion | |
| Playoffs | |
| Relegation |
