| Period | Manager | Country | born |
| 01/07/2024 - 30/06/2025 | Steffen Israel |
|
20/09/1985 |
| 01/01/2023 - 30/06/2024 | Sven Harnisch |
|
|
| 29/10/2022 - 31/12/2022 | Stefan Treitl |
|
03/06/1972 |
| 01/07/2022 - 10/10/2022 | Florian Kästner |
|
02/12/1998 |
| 01/07/2021 - 30/06/2022 | Tom Samson |
|
24/03/1995 |
| 11/12/2020 - 17/10/2021 | Marco Küntzel |
|
22/01/1976 |
| 01/07/2018 - 30/06/2021 | Daniel Wölfel |
|
14/12/1989 |
| 09/01/2015 - 30/06/2018 | Christian Fröhlich |
|
27/10/1977 |
| 01/07/2009 - 30/06/2015 | Georg-Martin Leopold |
|
11/08/1977 |
![FC Carl Zeiss Jena [Youth B]](https://s.hs-data.com/bilder/wappen/mittel/14892.gif?fallback=png "FC Carl Zeiss Jena [Youth B]")
![FC Carl Zeiss Jena [Women]](https://s.hs-data.com/bilder/wappen/mini/2382.gif?fallback=png "FC Carl Zeiss Jena [Women]"){kind=small}
![FC Carl Zeiss Jena II [Women]](https://s.hs-data.com/bilder/wappen/mini/12519.gif?fallback=png "FC Carl Zeiss Jena II [Women]"){kind=small}
![FC Carl Zeiss Jena [Youth]](https://s.hs-data.com/bilder/wappen/mini/10850.gif?fallback=png "FC Carl Zeiss Jena [Youth]"){kind=small}
![FC Carl Zeiss Jena II [Youth B]](https://s.hs-data.com/bilder/wappen/mini/37759.gif?fallback=png "FC Carl Zeiss Jena II [Youth B]"){kind=small}
![FC Carl Zeiss Jena [Youth B Women]](https://s.hs-data.com/bilder/wappen/mini/13944.gif?fallback=png "FC Carl Zeiss Jena [Youth B Women]"){kind=small}
![FC Carl Zeiss Jena [Youth C]](https://s.hs-data.com/bilder/wappen/mini/20651.gif?fallback=png "FC Carl Zeiss Jena [Youth C]"){kind=small}