| Period | Manager | Country | born |
| 01/07/2006 - 30/06/2009 | Dirk Ketzer |
|
14/09/1964 |
| 01/07/1994 - 31/12/2000 | Rolf Döbbelin |
|
30/01/1955 |
| 01/07/1964 - 30/06/1965 | Günter Behne |
|
19/10/1932 |
| 01/07/1962 - 31/12/1965 | Günter Weitkuhn |
|
27/04/1925 |
![Fortuna Magdeburg [Youth]](https://s.hs-data.com/bilder/wappen/mini/31342.gif?fallback=png "Fortuna Magdeburg [Youth]"){kind=small}
![Fortuna Magdeburg [Youth B]](https://s.hs-data.com/bilder/wappen/mini/31343.gif?fallback=png "Fortuna Magdeburg [Youth B]"){kind=small}