DFB-Nachwuchsliga   M. W D L goals
  at home 1 1 0 0 3 : 2
  Away 1 1 0 0 2 : 1
  2 2 0 0 5 : 3
DFB-Pokal   M. W D L goals
  Away 1 0 0 1 0 : 2
  1 0 0 1 0 : 2
Bundesliga Nord/Nordost   M. W D L goals
  at home 3 2 0 1 6 : 4
  Away 2 1 0 1 3 : 7
  5 3 0 2 9 : 11
overall   M. W D L goals
  at home 4 3 0 1 9 : 6
  Away 4 2 0 2 5 : 10
  Neutral Place 0 0 0 0 0 : 0
  8 5 0 3 14 : 16
DFB-Nachwuchsliga
2024/2025 Vorrunde Group H Hallescher FC - FC Carl Zeiss Jena 3:2 (1:1)
2024/2025 Vorrunde Group H FC Carl Zeiss Jena - Hallescher FC 1:2 (0:1)
DFB-Pokal
2010/2011 Round of 16 FC Carl Zeiss Jena - Hallescher FC 2:0 (0:0)
Bundesliga Nord/Nordost
2021/2022 8. Round Hallescher FC - FC Carl Zeiss Jena 3:1 (1:1)
2012/2013 20. Round Hallescher FC - FC Carl Zeiss Jena 0:2 (0:0)
2012/2013 7. Round FC Carl Zeiss Jena - Hallescher FC 2:3 (1:0)
2009/2010 22. Round FC Carl Zeiss Jena - Hallescher FC 5:0 (2:0)
2009/2010 9. Round Hallescher FC - FC Carl Zeiss Jena 3:1 (2:1)

For games that were decided on penalties the score after 120 minutes will be included in the ranking