DFB-Nachwuchsliga   M. W D L goals
  at home 1 1 0 0 3 : 2
  Away 1 1 0 0 3 : 2
  2 2 0 0 6 : 4
Bundesliga Nord/Nordost   M. W D L goals
  at home 9 7 1 1 37 : 13
  Away 9 3 2 4 14 : 16
  18 10 3 5 51 : 29
overall   M. W D L goals
  at home 10 8 1 1 40 : 15
  Away 10 4 2 4 17 : 18
  Neutral Place 0 0 0 0 0 : 0
  20 12 3 5 57 : 33
DFB-Nachwuchsliga
2024/2025 Vorrunde Group B FC St. Pauli - Hansa Rostock 2:3 (2:1)
2024/2025 Vorrunde Group B Hansa Rostock - FC St. Pauli 3:2 (1:1)
Bundesliga Nord/Nordost
2023/2024 16. Round FC St. Pauli - Hansa Rostock 2:1 (0:0)
2023/2024 3. Round Hansa Rostock - FC St. Pauli 2:3 (2:3)
2022/2023 1. Round FC St. Pauli - Hansa Rostock 3:1 (2:1)
2021/2022 14. Round Hansa Rostock - FC St. Pauli 5:1 (2:0)
2014/2015 26. Round FC St. Pauli - Hansa Rostock 3:1 (1:0)
2014/2015 13. Round Hansa Rostock - FC St. Pauli 2:2 (0:1)
2013/2014 14. Round Hansa Rostock - FC St. Pauli 4:3 (4:1)
2013/2014 1. Round FC St. Pauli - Hansa Rostock 1:1 (1:1)
2012/2013 20. Round Hansa Rostock - FC St. Pauli 2:1 (0:1)
2012/2013 7. Round FC St. Pauli - Hansa Rostock 3:0 (2:0)
2011/2012 17. Round Hansa Rostock - FC St. Pauli 5:0 (4:0)
2011/2012 4. Round FC St. Pauli - Hansa Rostock 1:1 (1:1)
2008/2009 18. Round Hansa Rostock - FC St. Pauli 4:0 (3:0)
2008/2009 5. Round FC St. Pauli - Hansa Rostock 0:3 (0:2)
2004/2005 26. Round Hansa Rostock - FC St. Pauli 9:3 (5:0)
2004/2005 13. Round FC St. Pauli - Hansa Rostock 2:4 (1:2)
2003/2004 23. Round Hansa Rostock - FC St. Pauli 4:0 (2:0)
2003/2004 11. Round FC St. Pauli - Hansa Rostock 1:2 (1:1)

For games that were decided on penalties the score after 120 minutes will be included in the ranking