| 4. Round | 13/09/2015 | FC Carl Zeiss Jena II | - | 1. FC Lok Leipzig | 1:2 | ||||
| 5. Round | 20/09/2015 | Rot-Weiß Erfurt II | - | FC Carl Zeiss Jena II | 1:2 | ||||
| 16. Round | 21/02/2016 | FC Carl Zeiss Jena II | - | SV SCHOTT Jena | 2:0 | ||||
| 17. Round | 27/02/2016 | Askania Bernburg | - | FC Carl Zeiss Jena II | 0:2 | ||||
| 20. Round | 20/03/2016 | FC Carl Zeiss Jena II | - | Rot-Weiß Erfurt II | 6:1 | ||||
| 21. Round | 02/04/2016 | VFC Plauen | - | FC Carl Zeiss Jena II | 4:4 | ||||
| 22. Round | 09/04/2016 | FC Carl Zeiss Jena II | - | Union Sandersdorf | 2:0 | ||||
| 24. Round | 23/04/2016 | VfL Halle 96 | - | FC Carl Zeiss Jena II | 3:1 | ||||
| 26. Round | 06/05/2016 | SSV Markranstädt | - | FC Carl Zeiss Jena II | 2:3 | ||||
| 28. Round | 21/05/2016 | BSG Wismut Gera | - | FC Carl Zeiss Jena II | 1:0 | ||||
| 29. Round | 05/06/2016 | FC Carl Zeiss Jena II | - | FC Einheit Rudolstadt | 0:2 | ||||
| 30. Round | 12/06/2016 | FC Eisenach | - | FC Carl Zeiss Jena II | 0:7 |
Russia