| 1. Round | 06/08/2016 | FC Carl Zeiss Jena II | - | Inter Leipzig | 0:4 |  |
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| 2. Round | 13/08/2016 | FC Einheit Rudolstadt | - | Inter Leipzig | 0:0 |  |
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| 3. Round | 27/08/2016 | Askania Bernburg | - | Inter Leipzig | 0:2 | |
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| 5. Round | 18/09/2016 | SV Merseburg 99 | - | Inter Leipzig | 4:2 | |
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| 6. Round | 24/09/2016 | Inter Leipzig | - | VFC Plauen | 1:1 | ||||
| 7. Round | 30/09/2016 | Germania Halberstadt | - | Inter Leipzig | 3:2 | ||||
| 8. Round | 15/10/2016 | Inter Leipzig | - | SV SCHOTT Jena | 1:3 | |
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| 10. Round | 29/10/2016 | Inter Leipzig | - | Bischofswerdaer FV | 4:1 | |
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| 4. Round | 31/10/2016 | Inter Leipzig | - | BSG Chemie Leipzig | 1:0 | |
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| 11. Round | 06/11/2016 | VfL Halle 96 | - | Inter Leipzig | 1:1 | ||||
| 12. Round | 19/11/2016 | Inter Leipzig | - | Brandenburger SC Süd | 2:1 | |
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| 13. Round | 27/11/2016 | Inter Leipzig | - | FSV Barleben | 3:1 | ||||
| 14. Round | 04/12/2016 | BSG Wismut Gera | - | Inter Leipzig | 2:0 | ||||
| 15. Round | 10/12/2016 | Inter Leipzig | - | Union Sandersdorf | 3:1 | |
Guinea-Bissau