| 1. Round | 07/08/2016 | FC Einheit Rudolstadt | - | VfL Halle 96 | 3:0 | ||||
| 2. Round | 13/08/2016 | VfL Halle 96 | - | Askania Bernburg | 0:3 | ||||
| 3. Round | 26/08/2016 | BSG Chemie Leipzig | - | VfL Halle 96 | 2:0 | ||||
| 4. Round | 09/09/2016 | VfL Halle 96 | - | SV Merseburg 99 | 0:1 | ||||
| 11. Round | 06/11/2016 | VfL Halle 96 | - | Inter Leipzig | 1:1 | ||||
| 13. Round | 26/11/2016 | VfL Halle 96 | - | BSG Wismut Gera | 0:2 | ||||
| 14. Round | 02/12/2016 | Union Sandersdorf | - | VfL Halle 96 | 1:0 | ||||
| 17. Round | 24/02/2017 | Askania Bernburg | - | VfL Halle 96 | 1:0 | ||||
| 19. Round | 12/03/2017 | SV Merseburg 99 | - | VfL Halle 96 | 1:0 | ||||
| 20. Round | 18/03/2017 | VfL Halle 96 | - | VFC Plauen | 1:1 | ||||
| 21. Round | 31/03/2017 | Germania Halberstadt | - | VfL Halle 96 | 5:0 | ||||
| 30. Round | 03/06/2017 | FC Carl Zeiss Jena II | - | VfL Halle 96 | 2:3 |
Germany